Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4789

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13156 and 13157 are separated by 358 nucleotides13157 and 13158 are separated by 737 nucleotides mRNA_4788: 13156 - KOG0143 Iron/ascorbate family oxidoreductases, at 1,014,741 to 1,016,024 13156 mRNA_4789: 13157 - K18402 PHF20 PHD finger protein 20, at 1,016,383 to 1,018,943 13157 mRNA_4790: 13158 - Hypothetical Protein, at 1,019,681 to 1,020,226 13158

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,015,640 - 13156 mRNA_4788 0.70 -0.0
1,015,803 - 13156 mRNA_4788 0.83 -1.1
1,015,927 + +0.0
1,016,097 - -0.9
1,016,099 - -0.2
1,016,203 + +0.1
1,016,222 + -1.2
1,016,251 + -3.6
1,019,310 - +0.0
1,019,313 - +0.8
1,019,314 + -0.1
1,019,316 + +0.8
1,019,327 + -1.2
1,019,363 + -0.0
1,019,452 - +0.4
1,019,596 - -0.7
1,019,604 + +1.1
1,019,607 - +0.7
1,019,634 + +2.0
1,019,763 + 13158 mRNA_4790 0.15 -1.0
1,019,766 - 13158 mRNA_4790 0.16 +0.1

Or see this region's nucleotide sequence