Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4810

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13177 and 13178 are separated by 302 nucleotides mRNA_4809: 13177 - Hypothetical Protein, at 1,063,200 to 1,067,794 13177 mRNA_4810: 13178 - KOG1304 Amino acid transporters, at 1,068,097 to 1,069,702 13178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,067,520 + +0.3
1,067,689 - -0.8
1,067,692 - +1.7
1,067,801 - +1.2
1,067,812 + +0.8
1,067,826 - +0.7
1,067,833 - +0.2
1,067,840 + +0.6
1,067,841 + +2.3
1,067,842 + +0.5
1,067,851 + -1.3
1,067,970 + -0.3
1,068,016 + +0.1
1,068,095 - -0.0
1,068,123 + +1.2
1,068,142 - +1.8
1,068,285 - 13178 mRNA_4810 0.12 -0.5
1,068,294 + 13178 mRNA_4810 0.12 +0.0
1,068,408 - 13178 mRNA_4810 0.19 -0.7
1,068,422 + 13178 mRNA_4810 0.20 +0.8
1,069,018 + 13178 mRNA_4810 0.57 -0.3
1,069,019 - 13178 mRNA_4810 0.57 -1.4
1,069,346 + 13178 mRNA_4810 0.78 -1.3
1,069,489 - 13178 mRNA_4810 0.87 +1.6
1,069,759 - -1.0
1,069,786 + -0.2
1,069,793 - +0.5
1,069,899 + -0.5
1,069,903 - +0.2
1,069,910 - -0.3
1,070,192 - +0.4
1,070,241 - +0.3
1,070,305 + +0.9
1,070,337 - +0.2
1,070,343 + -0.0
1,070,355 - -1.4
1,070,359 + +0.4
1,070,359 - +1.3
1,070,369 + +0.0
1,070,374 + +0.1
1,070,457 - -2.4
1,070,485 + -1.8
1,070,486 + -0.1
1,070,495 - +1.6
1,070,500 - -0.2
1,070,502 + -0.1
1,070,504 + -0.1
1,070,520 + +0.5
1,070,599 + -0.6
1,070,614 - +0.9
1,070,616 + -1.1
1,070,617 + -0.4
1,070,632 - +0.3
1,070,632 + -1.8
1,070,633 - +1.5
1,070,635 + +1.3
1,070,642 - +0.6
1,070,645 - -1.9
1,070,649 + +0.3
1,070,650 - +0.2
1,070,652 - -0.8
1,070,656 + +1.6
1,070,657 + -0.7
1,070,657 + -0.0
1,070,664 - -1.7
1,070,664 - -0.6
1,070,665 + +1.8
1,070,682 - +0.4
1,070,690 + +0.3
1,070,702 - +0.4

Or see this region's nucleotide sequence