Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4822

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13189 and 13190 are separated by 667 nucleotides13190 and 13191 are separated by 571 nucleotides mRNA_4821: 13189 - HMMPfam-Arylsulfotransferase (ASST)-PF14269, at 1,089,374 to 1,091,580 13189 mRNA_4822: 13190 - K13800 CMPK1, UMPK UMP-CMP kinase, at 1,092,248 to 1,093,445 13190 mRNA_4823: 13191 - K12191 CHMP2A charged multivesicular body protein 2A, at 1,094,017 to 1,095,155 13191

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,091,315 + 13189 mRNA_4821 0.88 +1.0
1,091,324 + 13189 mRNA_4821 0.88 +0.5
1,091,471 + +0.3
1,091,493 + -1.0
1,091,496 + +1.3
1,091,506 - -0.8
1,091,514 + -0.0
1,091,598 - -0.4
1,091,612 - -2.1
1,091,631 - -0.1
1,091,632 + -1.7
1,091,656 + -0.0
1,091,759 - +0.2
1,091,771 - +0.9
1,091,797 + +1.2
1,091,800 + -1.2
1,091,803 - -0.8
1,091,941 + +0.1
1,092,233 - +0.3
1,093,526 + +1.5
1,093,837 - +0.2
1,093,864 - +0.3
1,093,973 - +0.1

Or see this region's nucleotide sequence