Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4825

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13192 and 13193 are separated by 437 nucleotides13193 and 13194 are separated by 172 nucleotides mRNA_4824: 13192 - Hypothetical Protein, at 1,095,393 to 1,096,891 13192 mRNA_4825: 13193 - Hypothetical Protein, at 1,097,329 to 1,098,852 13193 mRNA_4826: 13194 - SUPERFAMILY--SSF52047, at 1,099,025 to 1,100,594 13194

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,096,501 - 13192 mRNA_4824 0.74 +0.3
1,096,572 - 13192 mRNA_4824 0.79 -1.2
1,096,720 - 13192 mRNA_4824 0.89 -2.3
1,096,833 + +0.1
1,096,880 - +1.5
1,096,883 - -0.5
1,096,886 + +1.1
1,096,891 + -1.3
1,097,028 - +0.3
1,097,034 - -0.3
1,097,513 - 13193 mRNA_4825 0.12 +0.5
1,097,760 + 13193 mRNA_4825 0.28 +0.3
1,098,203 + 13193 mRNA_4825 0.57 +2.3
1,098,340 + 13193 mRNA_4825 0.66 -0.7
1,098,422 + 13193 mRNA_4825 0.72 -0.4
1,098,637 - 13193 mRNA_4825 0.86 -1.3
1,098,809 - -0.7
1,099,025 - -1.9
1,099,159 - -1.6
1,099,198 - 13194 mRNA_4826 0.11 -0.1
1,099,406 - 13194 mRNA_4826 0.24 +0.6
1,099,492 - 13194 mRNA_4826 0.30 -1.5
1,099,672 - 13194 mRNA_4826 0.41 -0.5
1,099,783 + 13194 mRNA_4826 0.48 -1.3

Or see this region's nucleotide sequence