Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4850

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13217 and 13218 are separated by 347 nucleotides13218 and 13219 are separated by 288 nucleotides mRNA_4849: 13217 - HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176, at 1,141,315 to 1,143,566 13217 mRNA_4850: 13218 - K02309 DBF4 regulatory subunit for Cdc7p protein kinase, at 1,143,914 to 1,146,258 13218 mRNA_4851: 13219 - K06679 MAD1 mitotic spindle assembly checkpoint protein MAD1, at 1,146,547 to 1,149,479 13219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,142,970 - 13217 mRNA_4849 0.73 +1.3
1,142,997 - 13217 mRNA_4849 0.75 -0.4
1,143,308 - 13217 mRNA_4849 0.88 +0.1
1,143,327 + 13217 mRNA_4849 0.89 +0.4
1,143,338 + 13217 mRNA_4849 0.90 -1.0
1,143,576 - -1.3
1,143,588 + +0.1
1,143,609 + -0.8
1,143,611 + +0.6
1,143,620 + -0.3
1,143,621 + -1.0
1,143,621 - -0.7
1,143,622 - -0.0
1,143,624 - -1.0
1,143,625 + +0.6
1,143,625 - -1.5
1,143,631 + -0.0
1,143,632 + +0.1
1,143,634 - -0.8
1,143,638 + -0.7
1,143,645 + +1.4
1,143,646 + -1.1
1,143,681 - +3.6
1,143,686 - -0.5
1,143,718 + -0.1
1,143,748 + +0.4
1,143,750 - +1.1
1,143,866 + +0.7
1,146,239 - -0.5
1,146,488 - -0.7
1,146,496 - +0.5
1,146,530 + -1.5
1,146,537 - -2.2
1,146,540 + +0.2

Or see this region's nucleotide sequence