Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4858

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13225 and 13226 are separated by 453 nucleotides mRNA_4857: 13225 - Hypothetical Protein, at 1,159,127 to 1,160,011 13225 mRNA_4858: 13226 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,160,465 to 1,161,653 13226

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,159,505 + 13225 mRNA_4857 0.43 -1.1
1,159,527 + 13225 mRNA_4857 0.45 +0.6
1,159,533 + 13225 mRNA_4857 0.46 +0.3
1,159,671 - 13225 mRNA_4857 0.61 +0.0
1,159,680 + 13225 mRNA_4857 0.62 -0.4
1,159,693 + 13225 mRNA_4857 0.64 +3.3
1,159,700 + 13225 mRNA_4857 0.65 +0.6
1,160,426 + -0.1
1,160,580 + +1.1
1,160,737 + 13226 mRNA_4858 0.23 +0.4
1,161,117 + 13226 mRNA_4858 0.55 +1.4
1,161,226 + 13226 mRNA_4858 0.64 +2.0
1,161,397 - 13226 mRNA_4858 0.78 +0.8
1,161,535 - -0.6
1,161,822 - -0.5
1,161,823 + -0.6
1,162,279 - +0.4
1,162,296 + -0.1
1,162,296 + -0.1

Or see this region's nucleotide sequence