Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4874

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13241 and 13242 are separated by 797 nucleotides13242 and 13243 are separated by 118 nucleotides mRNA_4873: 13241 - K09205 KLF8_12 krueppel-like factor 8/12, at 1,191,308 to 1,191,654 13241 mRNA_4874: 13242 - KOG2922 Uncharacterized conserved protein, at 1,192,452 to 1,195,364 13242 mRNA_4875: 13243 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,195,483 to 1,197,426 13243

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,191,902 + -2.1
1,191,925 - +1.2
1,192,019 + +1.4
1,192,089 - -0.1
1,192,094 + +1.6
1,192,208 - -0.5
1,192,211 - -1.5
1,192,236 - +0.7
1,192,238 + -0.0
1,192,246 - -0.4
1,192,357 - -1.2
1,192,377 + -3.0
1,192,520 + -0.2
1,192,531 - -0.6
1,193,645 - 13242 mRNA_4874 0.41 -0.1
1,194,700 - 13242 mRNA_4874 0.77 +0.3
1,195,141 + +0.6
1,195,308 - +0.4
1,195,325 + +0.1
1,195,326 + +1.2
1,196,199 + 13243 mRNA_4875 0.37 -0.9
1,196,201 + 13243 mRNA_4875 0.37 -0.7

Or see this region's nucleotide sequence