Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4880

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13247 and 13248 are separated by 367 nucleotides13248 and 13249 are separated by 319 nucleotides mRNA_4879: 13247 - KOG1259 Nischarin, modulator of integrin alpha5 subunit action, at 1,208,439 to 1,211,006 13247 mRNA_4880: 13248 - K17795 TIM17 mitochondrial import inner membrane translocase subunit TIM17, at 1,211,374 to 1,212,342 13248 mRNA_4881: 13249 - K01890 FARSB, pheT phenylalanyl-tRNA synthetase beta chain, at 1,212,662 to 1,215,264 13249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,210,418 - 13247 mRNA_4879 0.77 -1.1
1,211,029 + -0.9
1,211,032 - +0.3
1,211,167 - +0.1
1,212,475 - +0.4
1,212,480 + +0.0
1,212,497 + -0.9
1,212,656 - +0.5

Or see this region's nucleotide sequence