Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5108

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13475 and 13476 are separated by 147 nucleotides13476 and 13477 are separated by 383 nucleotides mRNA_5107: 13475 - K03130 TAF5 transcription initiation factor TFIID subunit 5, at 1,772,311 to 1,779,712 13475 mRNA_5108: 13476 - BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'], at 1,779,860 to 1,781,501 13476 mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353 13477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,779,422 - -0.7
1,779,591 + +1.8
1,780,159 - 13476 mRNA_5108 0.18 -0.3
1,780,160 - 13476 mRNA_5108 0.18 +0.7
1,780,456 - 13476 mRNA_5108 0.36 +0.4
1,780,598 + 13476 mRNA_5108 0.45 +1.0
1,780,867 - 13476 mRNA_5108 0.61 +0.8
1,780,875 + 13476 mRNA_5108 0.62 +1.4
1,780,938 - 13476 mRNA_5108 0.66 +0.0
1,781,046 + 13476 mRNA_5108 0.72 +0.7
1,781,500 + +0.5
1,781,689 + -0.2
1,781,792 + +0.4
1,781,807 - +0.8
1,781,811 + -0.6

Or see this region's nucleotide sequence