Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5115

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13482 and 13483 are separated by 233 nucleotides13483 and 13484 are separated by 439 nucleotides mRNA_5114: 13482 - K14820 BRX1, BRIX1 ribosome biogenesis protein BRX1, at 1,792,660 to 1,793,898 13482 mRNA_5115: 13483 - Hypothetical Protein, at 1,794,132 to 1,795,760 13483 mRNA_5116: 13484 - K00721 DPM1 dolichol-phosphate mannosyltransferase, at 1,796,200 to 1,797,488 13484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,793,849 - -0.6
1,794,356 - 13483 mRNA_5115 0.14 -1.1
1,794,474 + 13483 mRNA_5115 0.21 -1.0
1,794,737 - 13483 mRNA_5115 0.37 +0.5
1,794,936 - 13483 mRNA_5115 0.49 -1.2
1,795,048 - 13483 mRNA_5115 0.56 +0.5
1,795,063 + 13483 mRNA_5115 0.57 +0.2
1,795,064 - 13483 mRNA_5115 0.57 +1.0
1,795,090 - 13483 mRNA_5115 0.59 +1.3
1,795,353 - 13483 mRNA_5115 0.75 +0.6
1,795,525 + 13483 mRNA_5115 0.86 +1.4
1,795,531 + 13483 mRNA_5115 0.86 -1.5
1,795,963 + +0.2
1,795,972 - -0.5
1,796,091 - -0.8
1,796,095 - -1.5
1,796,101 - +0.6
1,796,102 + +2.2
1,796,108 - +2.1
1,796,115 + +0.4
1,796,118 + -0.5
1,796,119 + -2.1
1,796,185 + +0.1

Or see this region's nucleotide sequence