Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5182

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13549 and 13550 are separated by 605 nucleotides13550 and 13551 are separated by 359 nucleotides mRNA_5181: 13549 - Hypothetical Protein, at 90,744 to 91,309 13549 mRNA_5182: 13550 - Hypothetical Protein, at 91,915 to 92,880 13550 mRNA_5183: 13551 - K02924 RP-L39e, RPL39 large subunit ribosomal protein L39e, at 93,240 to 93,967 13551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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90,965 - 13549 mRNA_5181 0.39 -0.4
91,291 - -0.7
91,382 + -0.4
91,440 - +0.3
91,511 + +1.3
91,516 + +0.3
91,831 + -0.3
91,834 - -0.1
91,838 + +0.3
91,997 - -0.0
92,100 + 13550 mRNA_5182 0.19 -1.7
92,577 + 13550 mRNA_5182 0.69 +0.1
93,139 + +0.2
93,263 + -0.4

Or see this region's nucleotide sequence