Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5190

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13557 and 13558 are separated by 385 nucleotides13558 and 13559 are separated by 549 nucleotides mRNA_5189: 13557 - K14290 XPO1, CRM1 exportin-1, at 109,082 to 113,752 13557 mRNA_5190: 13558 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 114,138 to 116,063 13558 mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116,613 to 117,622 13559

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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113,782 + +0.5
113,803 + +0.3
113,886 - -0.5
114,003 + +1.7
114,312 + -0.1
114,326 + -0.2
115,452 + 13558 mRNA_5190 0.68 +0.7
116,050 + -1.1
116,371 - -0.9
116,378 - +2.3
116,531 - -1.1
116,673 - +1.8
116,814 + 13559 mRNA_5191 0.20 +1.0
116,933 - 13559 mRNA_5191 0.32 -1.1
116,985 - 13559 mRNA_5191 0.37 -2.0

Or see this region's nucleotide sequence