Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5204

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13571 and 13572 are separated by 401 nucleotides mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870 13571 mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091 13572

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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145,322 - 13571 mRNA_5203 0.88 +0.0
145,382 - 13571 mRNA_5203 0.89 +2.3
145,437 + +0.4
145,438 - +1.2
145,444 - -0.3
145,468 - -0.5
145,477 + -1.3
145,499 - -1.1
145,499 - +0.2
145,506 + -0.1
145,520 + +0.0
145,597 + +0.7
145,602 - -1.6
145,627 + +0.8
145,637 + -0.9
145,728 - +1.5
145,739 - -2.5
145,744 - -0.1
145,753 + -0.3
145,765 - +1.0
145,779 + +0.6
145,924 - +0.9
145,924 + +1.1
145,926 - -0.8
145,935 + -0.0
145,938 - +0.3
146,057 + -0.5
146,060 - -0.2
146,075 - +0.7
146,106 + -0.6
146,273 - -0.7
146,850 - 13572 mRNA_5204 0.70 -0.3
147,662 + -1.1
147,890 - -1.0

Or see this region's nucleotide sequence