Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5208

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13575 and 13576 are separated by 35 nucleotides13576 and 13577 are separated by 445 nucleotides mRNA_5207: 13575 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 152,184 to 152,471 13575 mRNA_5208: 13576 - Hypothetical Protein, at 152,507 to 152,935 13576 mRNA_5209: 13577 - K03257 EIF4A translation initiation factor 4A, at 153,381 to 155,810 13577

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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151,835 + +1.6
151,981 + -1.3
152,026 + +0.8
152,218 - 13575 mRNA_5207 0.12 -0.0
152,456 - +0.7
152,774 + 13576 mRNA_5208 0.62 -0.4

Or see this region's nucleotide sequence