Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5245

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13612 and 13613 are separated by 577 nucleotides13613 and 13614 are separated by 222 nucleotides mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251,965 to 253,364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253,942 to 254,889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255,112 to 256,642 13614

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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253,002 + 13612 mRNA_5244 0.74 -2.0
253,161 - 13612 mRNA_5244 0.85 +0.6
253,414 - +0.9
253,714 - -2.1
253,727 - +2.0
253,749 - +1.0
253,890 + -1.5
254,028 + +0.5
254,603 - 13613 mRNA_5245 0.70 +1.2
254,754 + 13613 mRNA_5245 0.86 +0.6
254,912 - -0.2
254,914 + -0.3
254,985 - +1.8
255,027 + +0.7
255,061 + +0.6
255,062 + -1.5
255,073 - -0.3
255,074 + -0.9
255,082 - +1.4
255,094 + +0.9
255,105 + -0.7
255,354 - 13614 mRNA_5246 0.16 -0.4

Or see this region's nucleotide sequence