Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5248

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13615 and 13616 are separated by 804 nucleotides13616 and 13617 are separated by 449 nucleotides mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256,939 to 258,074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258,879 to 260,199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260,649 to 264,628 13617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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257,889 + 13615 mRNA_5247 0.84 +1.0
258,058 - -1.8
258,756 + +0.5
258,790 + -0.3
259,047 - 13616 mRNA_5248 0.13 +0.8
259,049 - 13616 mRNA_5248 0.13 +0.1
259,222 - 13616 mRNA_5248 0.26 -0.2
259,334 - 13616 mRNA_5248 0.34 -2.2
259,362 - 13616 mRNA_5248 0.37 +0.0
259,413 + 13616 mRNA_5248 0.40 +1.8
259,722 + 13616 mRNA_5248 0.64 -0.1
259,896 - 13616 mRNA_5248 0.77 -0.0
259,934 - 13616 mRNA_5248 0.80 +0.7
259,945 - 13616 mRNA_5248 0.81 +0.4
259,983 + 13616 mRNA_5248 0.84 -1.4
260,019 - 13616 mRNA_5248 0.86 -2.1
260,080 + -0.6
260,084 + -0.1
260,088 + -1.1
260,239 - -0.2
260,348 - +0.7
260,364 - -2.6
260,390 + +1.4
260,516 + -0.8
260,553 + -0.7

Or see this region's nucleotide sequence