Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5283

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13650 and 13651 are separated by 152 nucleotides mRNA_5282: 13650 - Hypothetical Protein, at 352,780 to 353,603 13650 mRNA_5283: 13651 - Hypothetical Protein, at 353,756 to 354,946 13651

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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353,521 + +0.4
353,524 + +0.9
353,835 + +0.3
353,857 - -0.7
354,027 + 13651 mRNA_5283 0.23 -0.8
354,122 - 13651 mRNA_5283 0.31 +0.7
354,447 + 13651 mRNA_5283 0.58 +0.4
354,927 - -0.9
354,978 - -3.2
355,006 - -3.4
355,010 - -1.2
355,055 + +0.8
355,335 - -1.0
355,339 + +0.7
355,621 - +1.2
355,748 - +0.3
355,759 - +1.4
355,761 + +0.3
355,872 - -0.0

Or see this region's nucleotide sequence