Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5352

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13720 and 13721 are separated by 754 nucleotides mRNA_5352: 13720 - KOG1674 Cyclin, at 522,797 to 523,590 13720 mRNA_5353: 13721 - Hypothetical Protein, at 524,345 to 526,185 13721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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521,859 + +0.5
521,974 + -1.0
522,261 - -2.1
522,414 + +1.1
523,178 - 13720 mRNA_5352 0.48 -1.3
523,817 - -1.6
524,023 - +0.7
524,093 - +0.8
524,175 + +1.2
524,338 - -0.5
524,352 + +0.3
524,504 - -0.8

Or see this region's nucleotide sequence