Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5367

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13734 and 13735 are separated by 402 nucleotides13735 and 13736 are separated by 370 nucleotides mRNA_5366: 13734 - KOG1752 Glutaredoxin and related proteins, at 550,518 to 551,881 13734 mRNA_5367: 13735 - K08838 STK24_25_MST4 serine/threonine-protein kinase 24/25/MST4, at 552,284 to 555,242 13735 mRNA_5368: 13736 - K09553 STIP1 stress-induced-phosphoprotein 1, at 555,613 to 556,991 13736

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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551,410 + 13734 mRNA_5366 0.65 -0.0
551,890 - +0.4
552,027 - +0.5
552,167 - +1.5
552,287 + +0.8
552,542 - -0.2
552,616 + 13735 mRNA_5367 0.11 +0.7
552,625 - 13735 mRNA_5367 0.12 +2.0
552,678 - 13735 mRNA_5367 0.13 +0.3
552,963 - 13735 mRNA_5367 0.23 -0.9
553,996 - 13735 mRNA_5367 0.58 +0.5
554,089 + 13735 mRNA_5367 0.61 -2.6
554,249 + 13735 mRNA_5367 0.66 +0.6
554,250 + 13735 mRNA_5367 0.66 +1.2
554,382 - 13735 mRNA_5367 0.71 -0.0
554,499 - 13735 mRNA_5367 0.75 +0.1
554,823 + 13735 mRNA_5367 0.86 -1.4
555,013 + +0.3
555,105 - -0.1
555,156 - +1.0
555,322 - -0.7
555,454 + +0.8
555,881 + 13736 mRNA_5368 0.19 +0.6
556,010 + 13736 mRNA_5368 0.29 -0.4

Or see this region's nucleotide sequence