Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5380

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13747 and 13748 are separated by 124 nucleotides13748 and 13749 are separated by 255 nucleotides mRNA_5379: 13747 - K12829 SF3B2, SAP145, CUS1 splicing factor 3B subunit 2, at 594,087 to 596,220 13747 mRNA_5380: 13748 - K17782 MIA40, CHCHD4 mitochondrial intermembrane space import and assembly protein 40, at 596,345 to 597,306 13748 mRNA_5381: 13749 - Hypothetical Protein, at 597,562 to 598,053 13749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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596,298 + -0.1
597,431 + +1.0
597,823 + 13749 mRNA_5381 0.53 +1.8
597,890 + 13749 mRNA_5381 0.67 -2.1
598,013 - +4.2
598,149 - -0.3

Or see this region's nucleotide sequence