Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5381

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13748 and 13749 are separated by 255 nucleotides mRNA_5380: 13748 - K17782 MIA40, CHCHD4 mitochondrial intermembrane space import and assembly protein 40, at 596,345 to 597,306 13748 mRNA_5381: 13749 - Hypothetical Protein, at 597,562 to 598,053 13749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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597,431 + +1.0
597,823 + 13749 mRNA_5381 0.53 +1.8
597,890 + 13749 mRNA_5381 0.67 -2.1
598,013 - +4.2
598,149 - -0.3
598,319 - -0.2
598,320 - -0.8
598,323 + -1.9
598,328 - +1.0
598,334 - -0.7
598,336 + -0.1
598,341 - -0.2
598,428 - +0.7
598,443 + -0.9
598,456 - +1.1
598,595 - -0.0
598,599 + -0.1
598,672 - +0.3
598,753 + -0.9
598,968 + +0.6
599,049 - -0.5

Or see this region's nucleotide sequence