Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + -2.4
1 + +0.2
1 + -0.5
1 + +0.9
23 + +0.4
29 + -1.8
29 + +1.4
34 + +0.4
39 + -2.6
39 + +2.5
47 + +0.7
50 + -0.9
50 + -2.9
50 + -2.0
50 + -2.1
50 - +0.1
51 + +0.4
61 + -0.5
62 + -0.2
96 + +2.7
116 + -0.3
158 - +1.2
159 - -0.7
160 - -0.6
169 - +0.8
180 - +0.8
189 + -0.8
198 + -1.7
201 - +1.3
208 - +0.6
210 + -1.8
225 + 13762 mRNA_5394 0.11 +0.5
225 + 13762 mRNA_5394 0.11 +1.4
244 + 13762 mRNA_5394 0.13 -0.0
245 - 13762 mRNA_5394 0.13 -1.7
271 - 13762 mRNA_5394 0.16 +0.2
276 - 13762 mRNA_5394 0.16 +0.9
277 + 13762 mRNA_5394 0.16 +0.4
280 - 13762 mRNA_5394 0.17 -0.0
306 + 13762 mRNA_5394 0.19 +0.8
317 - 13762 mRNA_5394 0.21 -1.6
345 + 13762 mRNA_5394 0.23 -0.4
345 - 13762 mRNA_5394 0.23 -0.6
347 + 13762 mRNA_5394 0.24 +0.7
359 - 13762 mRNA_5394 0.25 -0.3
387 - 13762 mRNA_5394 0.28 -3.2
399 + 13762 mRNA_5394 0.29 +0.9
434 + 13762 mRNA_5394 0.33 +1.6
447 - 13762 mRNA_5394 0.34 +0.4
485 - 13762 mRNA_5394 0.38 -0.5
543 + 13762 mRNA_5394 0.44 -0.3
649 + 13762 mRNA_5394 0.55 -0.6
667 + 13762 mRNA_5394 0.57 -0.2
667 - 13762 mRNA_5394 0.57 +0.1
678 - 13762 mRNA_5394 0.58 -0.4
718 + 13762 mRNA_5394 0.63 +0.0
723 + 13762 mRNA_5394 0.63 -0.7
802 + 13762 mRNA_5394 0.71 +0.6
806 + 13762 mRNA_5394 0.72 +1.7
905 - 13762 mRNA_5394 0.82 +0.0
911 + 13762 mRNA_5394 0.83 +0.9
965 + 13762 mRNA_5394 0.88 +0.4
966 + 13762 mRNA_5394 0.89 +1.8
968 + 13762 mRNA_5394 0.89 +0.9
1,014 - +1.1
1,084 - -1.0
1,103 - +0.2
1,110 + -0.3
1,245 - 13763 mRNA_5395 0.11 +2.0
1,260 - 13763 mRNA_5395 0.13 +0.1
1,376 - 13763 mRNA_5395 0.27 +1.4
1,438 + 13763 mRNA_5395 0.34 +1.2
1,438 + 13763 mRNA_5395 0.34 +0.7
1,438 + 13763 mRNA_5395 0.34 -1.4
1,523 + 13763 mRNA_5395 0.44 -0.2
1,528 - 13763 mRNA_5395 0.45 -0.8
1,533 + 13763 mRNA_5395 0.45 +0.8
1,538 + 13763 mRNA_5395 0.46 +2.7
1,538 - 13763 mRNA_5395 0.46 -0.1
1,556 + 13763 mRNA_5395 0.48 +0.5
1,639 + 13763 mRNA_5395 0.58 -0.2
1,854 - 13763 mRNA_5395 0.83 +1.2
1,855 - 13763 mRNA_5395 0.83 +0.0
1,887 - 13763 mRNA_5395 0.87 -1.4
1,908 - 13763 mRNA_5395 0.89 -0.5
2,000 - +0.2
2,009 + +0.6

Or see this region's nucleotide sequence