Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5405

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13772 and 13773 are separated by 119 nucleotides13773 and 13774 are separated by 145 nucleotides mRNA_5404: 13772 - Hypothetical Protein, at 22,508 to 23,850 13772 mRNA_5405: 13773 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 23,970 to 26,723 13773 mRNA_5406: 13774 - KOG2742 Predicted oxidoreductase, at 26,869 to 28,382 13774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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23,068 - 13772 mRNA_5404 0.42 -0.2
23,070 + 13772 mRNA_5404 0.42 +0.5
23,070 - 13772 mRNA_5404 0.42 +1.0
23,095 + 13772 mRNA_5404 0.44 +0.7
23,279 + 13772 mRNA_5404 0.57 -1.4
23,283 + 13772 mRNA_5404 0.58 +1.8
23,330 - 13772 mRNA_5404 0.61 -1.1
23,359 - 13772 mRNA_5404 0.63 -0.6
23,432 - 13772 mRNA_5404 0.69 -1.0
23,641 + 13772 mRNA_5404 0.84 +1.4
23,774 - +1.1
23,900 - +0.5
23,908 - -0.5
23,929 + +0.2
23,967 + -0.2
24,070 - +1.4
24,078 - +1.6
24,081 + +1.0
24,518 + 13773 mRNA_5405 0.20 -0.8
24,766 - 13773 mRNA_5405 0.29 -0.0
24,827 - 13773 mRNA_5405 0.31 -0.6
24,850 - 13773 mRNA_5405 0.32 -0.7
25,099 - 13773 mRNA_5405 0.41 +0.4
25,373 - 13773 mRNA_5405 0.51 +0.9
25,645 + 13773 mRNA_5405 0.61 +0.2
25,667 - 13773 mRNA_5405 0.62 +0.4
25,677 + 13773 mRNA_5405 0.62 -0.6
25,846 + 13773 mRNA_5405 0.68 +2.2
25,991 - 13773 mRNA_5405 0.73 +0.3
26,132 + 13773 mRNA_5405 0.79 -0.1
26,186 + 13773 mRNA_5405 0.80 -1.1
26,685 - -0.2
26,817 + +0.9
26,857 + +0.3
26,985 - -1.1
26,990 - +0.3
27,099 - 13774 mRNA_5406 0.15 +0.7
27,138 - 13774 mRNA_5406 0.18 -0.7
27,140 - 13774 mRNA_5406 0.18 +0.7
27,155 + 13774 mRNA_5406 0.19 +0.9
27,155 + 13774 mRNA_5406 0.19 +0.5
27,174 - 13774 mRNA_5406 0.20 +1.0
27,213 + 13774 mRNA_5406 0.23 -0.3
27,260 + 13774 mRNA_5406 0.26 +0.8
27,263 + 13774 mRNA_5406 0.26 +0.5
27,529 + 13774 mRNA_5406 0.44 -0.3
27,545 + 13774 mRNA_5406 0.45 +1.9
27,572 + 13774 mRNA_5406 0.46 +0.0
27,590 - 13774 mRNA_5406 0.48 +0.0
27,698 + 13774 mRNA_5406 0.55 +0.1
27,704 - 13774 mRNA_5406 0.55 +0.1
27,705 + 13774 mRNA_5406 0.55 +0.0
27,721 + 13774 mRNA_5406 0.56 +0.5

Or see this region's nucleotide sequence