Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5465

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13832 and 13833 are separated by 407 nucleotides13833 and 13834 are separated by 203 nucleotides mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155,001 to 155,781 13832 mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604 13833 mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476 13834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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156,008 - +0.7
156,127 + -1.5
156,290 - -2.3
156,424 + 13833 mRNA_5465 0.17 -0.5
157,124 - 13833 mRNA_5465 0.66 -1.2
157,294 + 13833 mRNA_5465 0.78 +0.7
157,560 - +0.6
157,561 + -0.8
158,158 + +2.4
158,223 - -0.9
158,350 + -0.8
158,450 + 13834 mRNA_5466 0.11 +0.3

Or see this region's nucleotide sequence