Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5479

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13846 and 13847 are separated by 396 nucleotides mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192,866 to 194,409 13846 mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194,806 to 195,878 13847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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193,945 - 13846 mRNA_5478 0.70 -1.4
194,019 + 13846 mRNA_5478 0.75 -1.4
194,111 + 13846 mRNA_5478 0.81 -0.2
194,225 + 13846 mRNA_5478 0.88 +1.0
194,534 - +0.6
194,717 - -0.5
194,883 - -0.1
194,977 + 13847 mRNA_5479 0.16 -0.9
195,751 - 13847 mRNA_5479 0.88 -0.1
195,993 + +0.2
196,121 + -2.2
196,170 + -0.1
196,170 + -0.2
196,283 - -1.2
196,310 + -0.7
196,311 - +0.8
196,321 + -2.2
196,466 + -2.4
196,471 + -0.1
196,486 + -0.1

Or see this region's nucleotide sequence