Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5504

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13871 and 13872 are separated by 454 nucleotides13872 and 13873 are separated by 355 nucleotides mRNA_5503: 13871 - HMMPfam-Chitin synthase III catalytic subunit-PF12271, at 251,563 to 253,057 13871 mRNA_5504: 13872 - KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU), at 253,512 to 254,101 13872 mRNA_5505: 13873 - KOG0297 TNF receptor-associated factor, at 254,457 to 255,755 13873

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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253,110 + +0.6
253,113 - +0.4
253,155 - -0.5
253,228 + +0.7
253,457 + +0.0
254,147 + -0.5
254,163 + -0.6
254,176 - +0.9
254,401 + +0.5
254,645 - 13873 mRNA_5505 0.14 +1.5
254,646 + 13873 mRNA_5505 0.15 +0.3
254,755 - 13873 mRNA_5505 0.23 +0.3
254,894 - 13873 mRNA_5505 0.34 -0.5
254,896 - 13873 mRNA_5505 0.34 +0.0
255,024 - 13873 mRNA_5505 0.44 +0.7
255,036 - 13873 mRNA_5505 0.45 -1.4

Or see this region's nucleotide sequence