Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5623

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13990 and 13991 are separated by 217 nucleotides13991 and 13992 are separated by 616 nucleotides mRNA_5622: 13990 - K00849 galK galactokinase, at 531,659 to 534,063 13990 mRNA_5623: 13991 - KOG3393 Predicted membrane protein, at 534,281 to 535,136 13991 mRNA_5624: 13992 - KOG1611 Predicted short chain-type dehydrogenase, at 535,753 to 536,555 13992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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533,322 - 13990 mRNA_5622 0.69 +0.5
533,563 + 13990 mRNA_5622 0.79 +0.2
533,727 + 13990 mRNA_5622 0.86 -0.3
534,012 + +1.6
534,155 + -0.8
534,158 - +1.3
534,346 - -2.1
534,423 - 13991 mRNA_5623 0.17 -0.3
534,738 - 13991 mRNA_5623 0.53 -0.2
534,914 - 13991 mRNA_5623 0.74 -2.0
534,951 - 13991 mRNA_5623 0.78 +0.2
534,987 + 13991 mRNA_5623 0.82 -0.9
535,219 - +0.7
535,355 + -0.5
535,365 + +1.2
535,388 + -2.0
535,444 + -1.0
535,570 + -0.2

Or see this region's nucleotide sequence