Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5664

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14031 and 14032 are separated by 112 nucleotides mRNA_5663: 14031 - K15441 TAD2, ADAT2 tRNA-specific adenosine deaminase 2, at 629,473 to 630,402 14031 mRNA_5664: 14032 - K01262 pepP Xaa-Pro aminopeptidase, at 630,515 to 632,715 14032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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630,472 - -1.0
630,475 - +1.7
630,477 + -0.7
630,485 - +0.3
630,487 - -0.3
630,490 - +1.0
630,497 + -0.5
630,611 - -0.7
630,612 - +0.7
631,649 - 14032 mRNA_5664 0.52 -1.3
632,181 + 14032 mRNA_5664 0.76 -0.4
632,181 + 14032 mRNA_5664 0.76 +1.1
632,325 - 14032 mRNA_5664 0.82 +2.3
632,507 - +0.8
632,599 + -0.1
632,671 - +0.1
632,684 - +0.8
632,750 - -1.4
632,786 - +1.1
632,792 - -0.5
632,796 + -0.8
632,798 - +1.4
632,805 - +1.0
632,810 - +0.7
632,815 - +0.4
632,818 + -0.1
632,829 - +0.1
632,951 - +0.5
632,952 - +1.7
632,957 + -1.5
632,972 + +2.2
633,098 - -1.5
633,287 + +1.8
633,552 + +0.4
633,581 + +0.2

Or see this region's nucleotide sequence