Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5670

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14037 and 14038 are separated by 396 nucleotides14038 and 14039 are separated by 853 nucleotides mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651,115 to 652,658 14037 mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653,055 to 658,546 14038 mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659,400 to 661,417 14039

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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652,800 + +0.4
652,822 + +0.6
652,840 + -0.0
652,931 + +0.9
652,934 - +1.7
652,972 + -0.6
652,973 + +0.1
653,253 + +0.6
653,683 - 14038 mRNA_5670 0.11 -0.6
653,921 - 14038 mRNA_5670 0.16 -0.9
654,279 + 14038 mRNA_5670 0.22 +1.2
654,285 - 14038 mRNA_5670 0.22 -0.3
654,429 - 14038 mRNA_5670 0.25 +2.2
654,576 - 14038 mRNA_5670 0.28 +0.7
655,105 + 14038 mRNA_5670 0.37 -0.1
655,694 + 14038 mRNA_5670 0.48 -0.5
655,826 + 14038 mRNA_5670 0.50 -0.5
655,873 - 14038 mRNA_5670 0.51 +0.2
655,930 + 14038 mRNA_5670 0.52 +2.0
656,098 + 14038 mRNA_5670 0.55 -1.0
656,107 - 14038 mRNA_5670 0.56 +0.5
656,552 - 14038 mRNA_5670 0.64 -0.7
656,842 + 14038 mRNA_5670 0.69 -0.3
656,882 + 14038 mRNA_5670 0.70 -1.4
656,894 - 14038 mRNA_5670 0.70 -2.2
657,150 - 14038 mRNA_5670 0.75 -0.5
657,725 + 14038 mRNA_5670 0.85 +0.2
657,736 + 14038 mRNA_5670 0.85 -0.2
658,023 + -0.3
658,311 + +2.0
658,605 + +2.5
658,606 + +0.2
658,612 - -1.2
659,042 - -0.7
659,042 - +0.3
659,048 - +1.4
659,051 + +0.8
659,183 + +0.2
659,342 - -0.0
659,349 + -0.9
659,503 + -0.3

Or see this region's nucleotide sequence