Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5675

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14042 and 14043 are separated by 199 nucleotides14043 and 14044 are separated by 43 nucleotides mRNA_5674: 14042 - K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3, at 666,180 to 667,115 14042 mRNA_5675: 14043 - Hypothetical Protein, at 667,315 to 670,414 14043 mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670,458 to 672,345 14044

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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667,073 - -1.0
667,117 + -1.3
667,445 - +1.3
667,451 + -0.4
667,476 - -1.4
667,505 + +0.0
667,525 - +0.6
667,947 + 14043 mRNA_5675 0.20 +0.3
668,075 + 14043 mRNA_5675 0.25 -1.4
668,318 - 14043 mRNA_5675 0.32 +0.6
668,436 + 14043 mRNA_5675 0.36 -0.4
668,609 - 14043 mRNA_5675 0.42 +1.9
669,170 - 14043 mRNA_5675 0.60 +3.3
669,493 - 14043 mRNA_5675 0.70 -1.0
669,555 + 14043 mRNA_5675 0.72 +1.1
669,728 + 14043 mRNA_5675 0.78 -1.9
669,883 + 14043 mRNA_5675 0.83 -0.0
669,924 + 14043 mRNA_5675 0.84 -2.8
670,175 - -0.1
670,178 + -0.8
670,202 - -0.2
670,238 + +0.3
670,406 - -0.3
670,411 + +1.5
670,424 - +1.0
670,699 + 14044 mRNA_5676 0.13 -1.3
670,702 + 14044 mRNA_5676 0.13 -0.6
670,876 - 14044 mRNA_5676 0.22 +0.5

Or see this region's nucleotide sequence