Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5687

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14054 and 14055 are separated by 340 nucleotides14055 and 14056 are separated by 269 nucleotides mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690,842 to 694,591 14054 mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694,932 to 696,791 14055 mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697,061 to 698,504 14056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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694,123 - 14054 mRNA_5686 0.87 -0.5
694,240 - -1.9
694,518 + +0.3
694,526 - +0.6
694,649 + +0.5
694,672 + +2.7
694,673 + +2.7
694,706 - +1.4
694,706 - -0.3
694,708 - -0.4
694,727 - -1.5
694,743 + +0.6
694,748 - +1.8
695,043 + -0.1
695,160 - 14055 mRNA_5687 0.12 +1.7
695,322 - 14055 mRNA_5687 0.21 +0.1
695,458 - 14055 mRNA_5687 0.28 +1.2
695,788 + 14055 mRNA_5687 0.46 +0.3
696,339 - 14055 mRNA_5687 0.76 -1.6
696,597 - 14055 mRNA_5687 0.90 -0.3
696,778 - -1.6
696,904 - -0.0
696,918 - -1.1
697,523 + 14056 mRNA_5688 0.32 -1.1
697,669 + 14056 mRNA_5688 0.42 -0.6

Or see this region's nucleotide sequence