Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5726

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14093 and 14094 are separated by 362 nucleotides14094 and 14095 are separated by 486 nucleotides mRNA_5725: 14093 - K03234 EEF2 elongation factor 2, at 779,611 to 783,273 14093 mRNA_5726: 14094 - KOG2539 Mitochondrial/chloroplast ribosome small subunit component, at 783,636 to 785,944 14094 mRNA_5727: 14095 - HMMPfam-Elongation factor G C-terminus-PF00679,SUPERFAMILY--SSF54980, at 786,431 to 787,168 14095

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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783,594 + +3.3
783,601 - +0.4
783,603 + -1.8
783,604 + +0.1
785,994 - +0.6
786,085 + +0.5
786,109 - -1.5
786,116 - -0.6
786,122 + -0.9

Or see this region's nucleotide sequence