Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5757

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14124 and 14125 are separated by 162 nucleotides14125 and 14126 are separated by 284 nucleotides mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872,220 to 874,136 14125 mRNA_5758: 14126 - K00627 DLAT, aceF, pdhC pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 874,421 to 875,943 14126

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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871,486 - 14124 mRNA_5756 0.55 +1.1
871,612 + 14124 mRNA_5756 0.65 +1.0
871,774 - 14124 mRNA_5756 0.78 +0.2
871,908 - 14124 mRNA_5756 0.88 +1.4
872,034 - +1.1
872,074 + -0.2
872,718 - 14125 mRNA_5757 0.26 -1.1
872,720 - 14125 mRNA_5757 0.26 +0.2
872,778 - 14125 mRNA_5757 0.29 -1.8
872,789 + 14125 mRNA_5757 0.30 -0.3
872,905 + 14125 mRNA_5757 0.36 +0.8
873,196 - 14125 mRNA_5757 0.51 +0.3
873,245 + 14125 mRNA_5757 0.53 +0.1
873,349 - 14125 mRNA_5757 0.59 +0.0
873,516 + 14125 mRNA_5757 0.68 +0.2
873,646 + 14125 mRNA_5757 0.74 -2.9
873,683 + 14125 mRNA_5757 0.76 +0.0
873,811 + 14125 mRNA_5757 0.83 -1.5
874,102 - +0.4
874,215 - +0.4

Or see this region's nucleotide sequence