Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5767

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14134 and 14135 are separated by 124 nucleotides14135 and 14136 are separated by 833 nucleotides mRNA_5766: 14134 - SUPERFAMILY--SSF52058, at 888,957 to 890,660 14134 mRNA_5767: 14135 - K02606 ORC4 origin recognition complex subunit 4, at 890,785 to 894,210 14135 mRNA_5768: 14136 - Hypothetical Protein, at 895,044 to 899,242 14136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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889,948 - 14134 mRNA_5766 0.58 -2.7
890,062 + 14134 mRNA_5766 0.65 +0.9
890,242 - 14134 mRNA_5766 0.75 -0.1
890,271 + 14134 mRNA_5766 0.77 -0.1
890,682 + +0.3
893,424 + 14135 mRNA_5767 0.77 -1.3
893,889 + -1.3
894,008 + +0.9
894,011 - -0.9
894,033 - +0.2
894,316 - -0.7
894,321 - +0.5
894,366 + +1.8
894,375 - +1.7
894,483 + +2.1
894,672 + +1.4
894,676 - -0.2
894,960 + +0.7
895,054 + +1.3
895,111 - +0.1

Or see this region's nucleotide sequence