Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5787

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14154 and 14155 are separated by 401 nucleotides14155 and 14156 are separated by 157 nucleotides mRNA_5786: 14154 - Hypothetical Protein, at 939,142 to 939,826 14154 mRNA_5787: 14155 - Hypothetical Protein, at 940,228 to 943,427 14155 mRNA_5788: 14156 - HMMPfam-Ribosome biogenesis protein SLX9-PF15341, at 943,585 to 944,558 14156

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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939,842 - -1.3
939,983 + +0.7
940,137 - +0.4
940,151 + -0.6
940,192 + +1.8
940,307 + -0.4
940,326 + -0.8
940,326 - +0.8
940,472 + +1.4
940,608 + 14155 mRNA_5787 0.12 +0.2
940,901 - 14155 mRNA_5787 0.21 +1.6
940,914 - 14155 mRNA_5787 0.21 -1.0
941,203 + 14155 mRNA_5787 0.30 +1.2
941,360 + 14155 mRNA_5787 0.35 +1.4
941,642 + 14155 mRNA_5787 0.44 +0.4
941,903 - 14155 mRNA_5787 0.52 +0.1
941,908 + 14155 mRNA_5787 0.53 +0.0
941,912 + 14155 mRNA_5787 0.53 +0.9
942,006 - 14155 mRNA_5787 0.56 -0.1
942,496 + 14155 mRNA_5787 0.71 +0.2
942,502 - 14155 mRNA_5787 0.71 -0.3
942,890 - 14155 mRNA_5787 0.83 +1.2
942,985 + 14155 mRNA_5787 0.86 +0.7
943,557 + +1.1

Or see this region's nucleotide sequence