Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5797

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14165 and 14166 are separated by 256 nucleotides mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371 14165 mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973 14166

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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961,192 + -2.3
961,324 + +0.4
961,631 + +0.5
961,637 + +0.3
961,641 - -1.5
961,772 - -1.1
961,772 - +2.0
961,773 + -2.1
961,778 + +0.5
961,781 - -0.1
961,782 + +0.4
961,790 + -0.0
961,791 + -1.6
961,794 - -0.9
961,812 + -0.4
961,813 - -0.0
961,817 - +2.4
961,829 - +0.5
961,916 - +1.4
961,939 + +0.3
961,940 - +1.5
961,972 + +1.2
961,980 - -2.1
961,984 - +1.2
961,986 - -0.2
961,989 + +1.2
961,991 + +1.1
961,993 - -0.6
962,003 + -0.6
962,018 + -1.8
962,053 - -0.6
962,061 + -0.0
962,064 + +2.1
962,071 + +0.3
962,096 + +0.5
962,097 - +0.1
962,113 - +1.7
962,125 - +1.7
962,187 - -0.2
962,187 - +0.0
962,197 + -0.5
962,206 - +2.0
962,211 - +1.3
962,219 - +0.5
962,243 - -0.1
962,249 + -0.3
962,256 + -1.0
962,257 + -0.1
962,265 - +0.7
962,269 - +0.1
962,407 + +0.7
962,413 - -0.8
962,627 - 14165 mRNA_5797 0.14 +1.8
963,388 + 14165 mRNA_5797 0.38 +0.2
963,637 - 14165 mRNA_5797 0.46 +1.5
964,119 - 14165 mRNA_5797 0.61 +0.4
964,128 + 14165 mRNA_5797 0.61 +0.3
964,133 + 14165 mRNA_5797 0.61 +0.4
964,157 - 14165 mRNA_5797 0.62 +0.3
964,302 + 14165 mRNA_5797 0.66 -1.3
964,650 - 14165 mRNA_5797 0.77 +1.4
964,716 - 14165 mRNA_5797 0.79 +1.6
965,283 - +1.0
965,601 - +0.7
965,635 - -1.1
966,025 - 14166 mRNA_5798 0.29 +0.3
966,286 - 14166 mRNA_5798 0.49 -0.6

Or see this region's nucleotide sequence