Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5810

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14177 and 14178 are separated by 250 nucleotides14178 and 14179 are separated by 640 nucleotides mRNA_5809: 14177 - KOG2979 Protein involved in DNA repair, at 988,329 to 990,216 14177 mRNA_5810: 14178 - K02730 PSMA6 20S proteasome subunit alpha 1, at 990,467 to 991,553 14178 mRNA_5811: 14179 - K01599 hemE, UROD uroporphyrinogen decarboxylase, at 992,194 to 993,567 14179

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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990,262 - +1.8
991,247 + 14178 mRNA_5810 0.72 +0.5
991,962 + -0.5
991,978 - -0.3
991,981 + +0.0
991,981 - +1.1
991,986 + -0.9
992,115 - -1.5
992,127 - -1.1

Or see this region's nucleotide sequence