Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5846

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14213 and 14214 are separated by 109 nucleotides14214 and 14215 are separated by 719 nucleotides mRNA_5845: 14213 - KOG1577 Aldo/keto reductase family proteins, at 1,072,070 to 1,073,549 14213 mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277 14214 mRNA_5847: 14215 - K17780 TIM8 mitochondrial import inner membrane translocase subunit TIM8, at 1,076,997 to 1,077,527 14215

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,073,234 + 14213 mRNA_5845 0.79 +0.8
1,073,701 + -0.6
1,074,120 - 14214 mRNA_5846 0.18 +0.9
1,074,120 - 14214 mRNA_5846 0.18 +1.6
1,074,494 - 14214 mRNA_5846 0.32 -0.0
1,075,085 - 14214 mRNA_5846 0.54 +2.7
1,075,119 + 14214 mRNA_5846 0.56 +0.5
1,075,353 - 14214 mRNA_5846 0.65 -0.8
1,076,077 + -0.7
1,076,173 - -0.2
1,076,267 + -0.5
1,076,524 + +0.6

Or see this region's nucleotide sequence