Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5889

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14256 and 14257 are separated by 895 nucleotides14257 and 14258 are separated by 344 nucleotides mRNA_5888: 14256 - K00688 PYG, glgP glycogen phosphorylase, at 1,171,973 to 1,175,579 14256 mRNA_5889: 14257 - K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae, at 1,176,475 to 1,177,214 14257 mRNA_5890: 14258 - K01876 DARS, aspS aspartyl-tRNA synthetase, at 1,177,559 to 1,180,094 14258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,175,864 - +2.3
1,175,877 - -0.7
1,175,884 - +2.2
1,175,890 + -0.1
1,175,898 + +1.3
1,175,920 + -1.6
1,175,982 + +1.3
1,176,051 - -1.5
1,176,192 - -1.4
1,176,219 + +2.8
1,176,340 + +0.0
1,176,974 + 14257 mRNA_5889 0.67 -1.0
1,177,250 - +0.2
1,177,256 + -0.2
1,177,315 - -1.3
1,177,404 - +0.1

Or see this region's nucleotide sequence