Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5909

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14276 and 14277 are separated by 386 nucleotides14277 and 14278 are separated by 695 nucleotides mRNA_5908: 14276 - Hypothetical Protein, at 1,218,937 to 1,220,289 14276 mRNA_5909: 14277 - K00077 panE, apbA 2-dehydropantoate 2-reductase, at 1,220,676 to 1,222,238 14277 mRNA_5910: 14278 - K11094 SNRPB2 U2 small nuclear ribonucleoprotein B'', at 1,222,934 to 1,224,150 14278

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,219,682 - 14276 mRNA_5908 0.55 +0.2
1,219,691 - 14276 mRNA_5908 0.56 +0.4
1,219,697 + 14276 mRNA_5908 0.56 -1.9
1,219,711 + 14276 mRNA_5908 0.57 +0.9
1,219,716 - 14276 mRNA_5908 0.58 +0.1
1,219,716 + 14276 mRNA_5908 0.58 -2.5
1,219,717 + 14276 mRNA_5908 0.58 -1.4
1,219,719 + 14276 mRNA_5908 0.58 +1.3
1,219,719 + 14276 mRNA_5908 0.58 -0.6
1,219,731 - 14276 mRNA_5908 0.59 +0.5
1,219,732 + 14276 mRNA_5908 0.59 -0.3
1,219,740 + 14276 mRNA_5908 0.59 +1.1
1,219,749 + 14276 mRNA_5908 0.60 +0.1
1,219,762 + 14276 mRNA_5908 0.61 -0.4
1,219,765 - 14276 mRNA_5908 0.61 -0.6
1,219,782 - 14276 mRNA_5908 0.62 -0.5
1,219,785 - 14276 mRNA_5908 0.63 +0.5
1,219,833 - 14276 mRNA_5908 0.66 -0.5
1,219,835 + 14276 mRNA_5908 0.66 -0.3
1,219,839 + 14276 mRNA_5908 0.67 +0.3
1,219,853 - 14276 mRNA_5908 0.68 -1.9
1,219,894 + 14276 mRNA_5908 0.71 +0.7
1,219,922 + 14276 mRNA_5908 0.73 +0.0
1,219,963 + 14276 mRNA_5908 0.76 -1.7
1,219,977 - 14276 mRNA_5908 0.77 -0.7
1,219,990 + 14276 mRNA_5908 0.78 +0.3
1,220,019 + 14276 mRNA_5908 0.80 -0.1
1,220,021 + 14276 mRNA_5908 0.80 +0.3
1,220,048 - 14276 mRNA_5908 0.82 -0.7
1,220,049 + 14276 mRNA_5908 0.82 -1.3
1,220,063 + 14276 mRNA_5908 0.83 +1.0
1,220,077 + 14276 mRNA_5908 0.84 -0.2
1,220,095 - 14276 mRNA_5908 0.86 +0.0
1,220,106 + 14276 mRNA_5908 0.86 -0.8
1,220,121 - 14276 mRNA_5908 0.88 +1.1
1,220,152 + 14276 mRNA_5908 0.90 -0.4
1,220,158 + -0.0
1,220,162 + -0.6
1,220,167 - -0.2
1,220,179 + +0.7
1,220,200 + -1.2
1,220,229 - -0.0
1,220,468 + +0.7
1,220,523 + -1.4
1,222,555 + -2.2
1,222,558 + +1.3
1,222,563 - +1.9
1,222,570 - -1.5
1,222,694 + +3.0
1,222,695 - -0.6
1,222,696 - +1.1
1,222,701 + -0.0
1,222,713 - +0.1
1,222,714 + -1.4
1,222,815 + -0.5
1,222,845 - -0.1
1,222,849 - +0.7
1,222,853 + -0.0
1,222,856 + -1.0
1,222,863 - +1.3
1,222,867 + +0.0
1,222,868 + -0.4
1,222,873 + -0.8

Or see this region's nucleotide sequence