Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5919

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14286 and 14287 are separated by 585 nucleotides14287 and 14288 are separated by 546 nucleotides mRNA_5918: 14286 - K11498 CENPE centromeric protein E, at 1,241,220 to 1,242,760 14286 mRNA_5919: 14287 - KOG1836 Extracellular matrix glycoprotein Laminin subunits alpha and gamma, at 1,243,346 to 1,244,488 14287 mRNA_5920: 14288 - K03022 RPC8, POLR3H DNA-directed RNA polymerase III subunit RPC8, at 1,245,035 to 1,246,181 14288

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,242,969 - -0.8
1,243,026 + -1.0
1,243,258 + -0.9
1,243,326 + +0.9
1,243,356 - +0.5
1,243,582 - 14287 mRNA_5919 0.21 +1.0
1,243,609 + 14287 mRNA_5919 0.23 -1.1
1,243,670 + 14287 mRNA_5919 0.28 +1.7
1,244,004 + 14287 mRNA_5919 0.58 -0.1
1,244,006 - 14287 mRNA_5919 0.58 +1.3
1,244,332 + 14287 mRNA_5919 0.86 -0.5
1,244,547 - -3.4
1,244,817 + -1.6

Or see this region's nucleotide sequence