Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5924

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14291 and 14292 are separated by 407 nucleotides14292 and 14293 are separated by 485 nucleotides mRNA_5923: 14291 - Hypothetical Protein, at 1,250,521 to 1,252,359 14291 mRNA_5924: 14292 - Hypothetical Protein, at 1,252,767 to 1,253,649 14292 mRNA_5925: 14293 - Hypothetical Protein, at 1,254,135 to 1,254,530 14293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,251,955 - 14291 mRNA_5923 0.78 -0.3
1,251,986 - 14291 mRNA_5923 0.80 -0.7
1,251,992 + 14291 mRNA_5923 0.80 -1.3
1,252,007 + 14291 mRNA_5923 0.81 +0.1
1,252,123 - 14291 mRNA_5923 0.87 +1.4
1,252,128 + 14291 mRNA_5923 0.87 -1.8
1,252,131 - 14291 mRNA_5923 0.88 -0.1
1,252,132 + 14291 mRNA_5923 0.88 +1.4
1,252,138 + 14291 mRNA_5923 0.88 -2.0
1,252,139 - 14291 mRNA_5923 0.88 -0.8
1,252,143 - 14291 mRNA_5923 0.88 +0.1
1,252,194 - -0.2
1,252,221 + +1.1
1,252,358 + -0.9
1,252,770 - +1.6
1,253,725 - +0.0
1,253,822 + -0.5
1,254,112 + -0.2
1,254,125 - +1.3
1,254,403 + 14293 mRNA_5925 0.68 +0.3

Or see this region's nucleotide sequence