Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6032

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14399 and 14400 are separated by 520 nucleotides14400 and 14401 are separated by 822 nucleotides mRNA_6031: 14399 - KOG2890 Predicted membrane protein, at 1,484,173 to 1,485,684 14399 mRNA_6032: 14400 - Hypothetical Protein, at 1,486,205 to 1,487,772 14400 mRNA_6033: 14401 - Hypothetical Protein, at 1,488,595 to 1,490,149 14401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,485,592 - +0.6
1,485,709 + +0.1
1,485,818 + -0.6
1,485,822 + -0.9
1,485,850 - -1.2
1,485,979 - +0.3
1,485,987 - -1.1
1,486,004 + -1.7
1,486,138 - +0.0
1,486,239 + +0.7
1,486,331 - +0.4
1,486,332 + +0.1
1,486,422 + 14400 mRNA_6032 0.14 -0.9
1,486,425 + 14400 mRNA_6032 0.14 -0.2
1,486,464 + 14400 mRNA_6032 0.17 -1.3
1,486,477 - 14400 mRNA_6032 0.17 -0.3
1,486,480 - 14400 mRNA_6032 0.18 +2.6
1,486,541 + 14400 mRNA_6032 0.21 -1.8
1,486,596 - 14400 mRNA_6032 0.25 +0.1
1,486,730 - 14400 mRNA_6032 0.33 -0.7
1,486,736 - 14400 mRNA_6032 0.34 +0.6
1,486,853 - 14400 mRNA_6032 0.41 -0.8
1,486,883 + 14400 mRNA_6032 0.43 +0.7
1,486,956 + 14400 mRNA_6032 0.48 -3.7
1,487,081 + 14400 mRNA_6032 0.56 +0.6
1,487,098 - 14400 mRNA_6032 0.57 -1.1
1,487,164 + 14400 mRNA_6032 0.61 -0.2
1,487,211 + 14400 mRNA_6032 0.64 +0.8
1,487,318 + 14400 mRNA_6032 0.71 +0.3
1,487,322 + 14400 mRNA_6032 0.71 +1.1
1,487,340 - 14400 mRNA_6032 0.72 -0.7
1,487,351 - 14400 mRNA_6032 0.73 -2.5
1,487,357 + 14400 mRNA_6032 0.73 -2.0
1,487,592 - 14400 mRNA_6032 0.88 -1.2
1,487,595 + 14400 mRNA_6032 0.89 +1.4
1,487,630 - +0.2
1,487,642 + -0.2
1,487,684 + +0.2
1,487,766 - +0.5
1,487,780 - -0.1
1,487,797 + -0.1
1,487,797 + -1.3
1,487,806 - +0.2
1,488,123 - -0.1
1,488,197 + -2.0
1,488,201 - +0.1
1,488,218 + +1.8
1,488,378 - +1.1
1,488,385 - -1.0
1,488,391 + +2.4
1,488,393 + -0.5
1,488,396 + -0.3
1,488,519 + +0.5
1,488,519 + +0.0
1,488,686 + +0.6
1,488,740 - +0.9

Or see this region's nucleotide sequence