Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6133

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14500 and 14501 are separated by 923 nucleotides14501 and 14502 are separated by 941 nucleotides mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80,380 to 84,392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85,316 to 87,118 14501 mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88,060 to 89,781 14502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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84,582 + -2.1
84,720 - -1.7
84,721 - +1.2
84,869 - -3.0
84,871 - -0.3
84,890 - -0.2
84,935 + -0.2
85,033 - +0.4
85,039 - -0.8
85,045 - -0.6
85,056 - -0.3
85,064 - -1.4
85,075 - -1.6
85,095 - -2.5
85,099 - -1.1
85,106 - -0.2
85,113 - -1.7
85,115 + -0.8
85,144 + +0.7
85,282 - -0.1
86,214 - 14501 mRNA_6133 0.50 +0.2
86,287 - 14501 mRNA_6133 0.54 -0.8
86,457 - 14501 mRNA_6133 0.63 -0.4
86,565 + 14501 mRNA_6133 0.69 -0.5
86,687 + 14501 mRNA_6133 0.76 -0.2
86,706 - 14501 mRNA_6133 0.77 +0.8
86,726 - 14501 mRNA_6133 0.78 -1.0
86,840 - 14501 mRNA_6133 0.85 +2.3
86,842 - 14501 mRNA_6133 0.85 +2.4
86,859 - 14501 mRNA_6133 0.86 +0.1
86,864 - 14501 mRNA_6133 0.86 +1.4
86,877 - 14501 mRNA_6133 0.87 +2.5
87,002 - +0.1
87,012 - +1.3
87,018 + -1.3
87,027 + +1.6
87,033 + -0.9
87,137 - +0.5
87,139 - +0.9
87,139 - +1.3
87,139 - +2.6
87,151 + -0.7
87,156 - -0.7
87,164 + +0.6
87,171 - -1.2
87,174 + +2.7
87,176 - +0.3
87,183 + -1.3
87,184 + -0.8
87,193 - +0.1
87,198 - +0.4
87,199 - +1.9
87,199 - -0.1
87,199 + +0.1
87,200 + +0.2
87,339 - +0.0
87,341 - +1.4
87,341 + -1.7
87,342 - +0.7
87,346 - +0.2
87,347 - +0.2
87,347 - +1.1
87,352 + +0.2
87,357 - -3.1
87,359 - +0.8
87,362 - +0.1
87,363 - -0.1
87,368 - -2.6
87,377 - +0.6
87,393 - -0.0
87,394 + +0.2
87,515 + +1.5
87,518 - +0.9
87,518 + -0.5
87,698 - -0.1

Or see this region's nucleotide sequence