Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6149

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14516 and 14517 are separated by 426 nucleotides14517 and 14518 are separated by 345 nucleotides mRNA_6148: 14516 - Hypothetical Protein, at 121,502 to 122,312 14516 mRNA_6149: 14517 - Hypothetical Protein, at 122,739 to 123,475 14517 mRNA_6150: 14518 - KOG3399 Predicted Yippee-type zinc-binding protein, at 123,821 to 124,477 14518

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
121,780 + 14516 mRNA_6148 0.34 +0.6
122,081 - 14516 mRNA_6148 0.71 -1.7
122,082 + 14516 mRNA_6148 0.72 -0.0
122,195 - 14516 mRNA_6148 0.85 +2.3
122,497 + -0.5
122,706 - -1.1
122,781 - -0.6
122,790 - -0.1
122,800 + -0.5
122,854 + 14517 mRNA_6149 0.16 -1.2
122,955 - 14517 mRNA_6149 0.29 -1.5
123,260 - 14517 mRNA_6149 0.71 -0.9
123,266 + 14517 mRNA_6149 0.72 -0.9
123,402 + -1.0
123,533 - -1.3
123,534 + -0.2
123,676 + -0.6
123,731 + -0.0
123,850 + -0.8
124,038 + 14518 mRNA_6150 0.33 -0.0
124,102 + 14518 mRNA_6150 0.43 +0.4
124,299 + 14518 mRNA_6150 0.73 +2.8
124,382 - 14518 mRNA_6150 0.85 -1.2
124,392 - 14518 mRNA_6150 0.87 +0.0

Or see this region's nucleotide sequence