Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6165

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14532 and 14533 are separated by 191 nucleotides14533 and 14534 are separated by 151 nucleotides mRNA_6164: 14532 - BLAST ECSIT domain-containing protein [Rhizoctonia solani A..., at 149,620 to 151,505 14532 mRNA_6165: 14533 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383, at 151,697 to 155,852 14533 mRNA_6166: 14534 - Hypothetical Protein, at 156,004 to 157,222 14534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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151,574 - +0.2
151,868 - -0.7
151,895 - +0.3
152,793 - 14533 mRNA_6165 0.26 -0.9
152,802 + 14533 mRNA_6165 0.27 +0.2
153,077 + 14533 mRNA_6165 0.33 -1.3
153,088 + 14533 mRNA_6165 0.33 -0.1
153,209 - 14533 mRNA_6165 0.36 -0.1
153,351 - 14533 mRNA_6165 0.40 +1.4
153,361 + 14533 mRNA_6165 0.40 -1.3
153,365 + 14533 mRNA_6165 0.40 +1.5
153,397 + 14533 mRNA_6165 0.41 -0.1
153,399 - 14533 mRNA_6165 0.41 +0.3
153,405 + 14533 mRNA_6165 0.41 -2.3
153,406 + 14533 mRNA_6165 0.41 +0.8
153,417 + 14533 mRNA_6165 0.41 +1.0
153,421 + 14533 mRNA_6165 0.41 -0.2
153,477 - 14533 mRNA_6165 0.43 -1.0
153,485 + 14533 mRNA_6165 0.43 -0.3
153,487 + 14533 mRNA_6165 0.43 -0.3
153,488 - 14533 mRNA_6165 0.43 -0.5
153,492 - 14533 mRNA_6165 0.43 +1.0
153,941 - 14533 mRNA_6165 0.54 -1.0
153,945 + 14533 mRNA_6165 0.54 -0.3
154,171 - 14533 mRNA_6165 0.60 +0.3
154,228 - 14533 mRNA_6165 0.61 -0.4
154,266 - 14533 mRNA_6165 0.62 +0.9
154,778 - 14533 mRNA_6165 0.74 +0.3
154,797 + 14533 mRNA_6165 0.75 +0.5
155,074 - 14533 mRNA_6165 0.81 -1.1
155,074 - 14533 mRNA_6165 0.81 -2.6
155,128 - 14533 mRNA_6165 0.83 -0.3
155,185 - 14533 mRNA_6165 0.84 +0.0
155,224 - 14533 mRNA_6165 0.85 +1.0
155,226 + 14533 mRNA_6165 0.85 -0.2
155,337 - 14533 mRNA_6165 0.88 -0.2
155,504 + -1.4
155,627 + +0.6
155,645 - +0.5
155,652 + +0.2
155,661 - +1.1
155,822 + +0.5
155,823 + +0.9
155,832 + -0.1
155,926 - +1.4
155,926 - -0.0
155,931 - +0.6
155,956 + +0.1
155,960 - -1.4
155,970 - -2.5
156,148 + 14534 mRNA_6166 0.12 +0.1
156,252 - 14534 mRNA_6166 0.20 -0.2
156,729 - 14534 mRNA_6166 0.59 -0.3
156,832 - 14534 mRNA_6166 0.68 +1.3

Or see this region's nucleotide sequence