Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6211

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14578 and 14579 are separated by 94 nucleotides mRNA_6210: 14578 - HMMPfam-DNA replication and checkpoint protein-PF11719, at 259,618 to 261,776 14578 mRNA_6211: 14579 - Hypothetical Protein, at 261,871 to 262,723 14579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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262,098 - 14579 mRNA_6211 0.27 +1.3
262,104 - 14579 mRNA_6211 0.27 -1.7
262,209 + 14579 mRNA_6211 0.40 +0.0
262,516 + 14579 mRNA_6211 0.76 -2.4
262,799 - -1.2
263,246 + -0.4
263,248 - +0.4

Or see this region's nucleotide sequence