Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6225

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14592 and 14593 are separated by 36 nucleotides mRNA_6224: 14592 - Hypothetical Protein, at 289,691 to 292,264 14592 mRNA_6225: 14593 - Hypothetical Protein, at 292,301 to 294,618 14593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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291,883 + 14592 mRNA_6224 0.85 -0.6
293,232 + 14593 mRNA_6225 0.40 -0.9
293,237 + 14593 mRNA_6225 0.40 +0.5
293,239 + 14593 mRNA_6225 0.40 -2.0
293,661 - 14593 mRNA_6225 0.59 +0.1
294,363 + 14593 mRNA_6225 0.89 -0.5
294,368 - 14593 mRNA_6225 0.89 +2.0
294,371 + 14593 mRNA_6225 0.89 -0.1
294,505 - -1.2
294,565 - +1.9
294,593 + -2.8
294,785 + -0.8
294,862 - +1.4
295,112 + -0.9

Or see this region's nucleotide sequence