Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6244

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14611 and 14612 are separated by 692 nucleotides mRNA_6243: 14611 - Hypothetical Protein, at 337,932 to 340,072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340,765 to 342,148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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339,846 + 14611 mRNA_6243 0.89 -0.5
339,858 + 14611 mRNA_6243 0.90 -1.0
339,861 - +1.6
339,992 + -1.4
339,998 + +0.7
340,150 + -0.0
340,297 - +0.6
340,298 + +0.7
340,307 + -0.1
340,308 - -1.1
340,421 - +0.0
340,453 - +1.5
340,557 - +2.3
340,566 - +1.9
340,573 + -0.0
340,584 + +0.3
340,588 + -0.4
340,588 - -0.7
340,691 + +0.3
340,693 - -0.8
340,741 - +2.1
342,148 - -0.3
342,180 + -1.5
342,264 + +0.7
342,309 - +0.3
342,428 + +0.8
342,453 + -0.2
342,463 + -0.3
342,469 + +1.1
342,470 - +0.0
342,607 - +0.3
342,609 - -0.7
342,621 + -0.9
342,659 - -0.4
342,760 - +0.4
342,778 + +0.7
342,797 + +0.5
342,828 - -0.0
342,886 + -0.0
342,922 + -0.1
342,941 + -1.1
342,963 - -1.4
342,971 + +0.4
342,988 - +3.3

Or see this region's nucleotide sequence