Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6258

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14625 and 14626 are separated by 842 nucleotides14626 and 14627 are separated by 517 nucleotides mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060 14625 mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371,903 to 374,480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374,998 to 377,098 14627

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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371,002 - +0.4
371,210 - +1.5
371,293 + -0.1
372,120 - +0.3
372,178 + 14626 mRNA_6258 0.11 -0.6
372,886 - 14626 mRNA_6258 0.38 +0.1
373,064 + 14626 mRNA_6258 0.45 +1.3
373,185 + 14626 mRNA_6258 0.50 +0.4
373,226 - 14626 mRNA_6258 0.51 -0.9
373,304 + 14626 mRNA_6258 0.54 -0.2
373,349 + 14626 mRNA_6258 0.56 +0.2
373,756 - 14626 mRNA_6258 0.72 +0.3
373,804 + 14626 mRNA_6258 0.74 -0.9
374,321 + +1.6
374,481 + -1.3
374,488 + -0.3
374,512 + -0.2
374,627 + -0.5
374,628 + -1.8
374,639 + -0.1
374,639 - +2.9
374,647 + +0.7
374,648 - +0.2
374,650 - +0.2
374,668 - +0.6
374,671 - +1.1
374,676 + -1.0
374,676 + -0.1
374,720 + +0.6
374,723 + -2.4
374,724 + -1.9
374,732 + -0.7
374,743 + -0.5
374,835 - -0.4
374,838 + +1.4
374,847 - -0.4
374,861 + -3.0
374,861 + -0.2
374,882 + +0.6
374,892 + -1.4
374,901 - -0.1
374,901 + +0.6
374,911 - -0.2
374,919 + -0.1
374,925 - -1.0
374,925 - +1.0
374,928 + -0.5
374,930 + -0.5
374,932 + -0.6
374,932 + -1.0
374,934 - -2.4
374,934 - +0.6
374,935 + -0.2
374,937 + +0.1
374,937 + +0.5
374,943 + +0.8
374,946 - -0.9
374,947 + -0.0
374,948 + -0.2
374,948 - +1.2
374,951 + +1.8
374,952 + -3.2
374,954 + +0.9
374,957 - -1.5
375,055 + +0.2
375,125 + -0.4
375,393 - 14627 mRNA_6259 0.19 -1.4
375,395 - 14627 mRNA_6259 0.19 -1.1
375,429 + 14627 mRNA_6259 0.21 +0.9

Or see this region's nucleotide sequence